IQ-TREE multicore version 1.6.11 for Linux 64-bit built Jun  6 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    fermat (AVX2, FMA3, 1009 GB RAM)
Command: ../../iqtree -s Troglosironidae_16S.fasta -m TEST -bb 1000 -alrt 1000
Seed:    172584 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Tue Nov 19 03:23:24 2019
Kernel:  AVX+FMA - 1 threads (128 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 128 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Troglosironidae_16S.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 64 sequences with 462 columns, 271 distinct patterns
171 parsimony-informative, 71 singleton sites, 220 constant sites
                                Gap/Ambiguity  Composition  p-value
   1  O_cameroonensis_IZ132315         13.85%    failed      0.00%
   2  H_tama_IZ134691                  13.42%    passed     17.60%
   3  M_savannahensis_IZ134557         13.42%    failed      0.00%
   4  P_gabonica_IZ132297              13.20%    passed     13.12%
   5  T_monteithi_IZ51948               3.25%    passed     98.16%
   6  T_ninqua_IZ134768                 7.79%    passed     99.07%
   7  T_wilsoni_IZ134787                2.60%    passed     85.81%
   8  T_longifossa_IZ65208              2.60%    passed     81.18%
   9  T_urbanus_IZ134780m               2.60%    passed     92.74%
  10  T_pin_IZ133854_1                  1.95%    passed     97.78%
  11  T_pin_IZ133854_2                  1.95%    passed     97.46%
  12  T_pin_IZ133874_2                  1.95%    passed     97.46%
  13  T_pin_IZ133875_4                  1.95%    passed     97.46%
  14  T_pin_IZ133875                    1.95%    passed     97.46%
  15  T_pin_IZ133876                    1.95%    passed     97.46%
  16  T_pin_IZ133875_2                  1.95%    passed     97.46%
  17  T_pin_IZ133874_1                  1.95%    passed     96.21%
  18  T_pin_IZ133875_5                  1.95%    passed     97.58%
  19  T_pseudojuberthiei_IZ133855_1     1.95%    passed     98.90%
  20  T_pseudojuberthiei_IZ133855_2     1.95%    passed     98.90%
  21  T_pseudojuberthiei_IZ133856       1.95%    passed     98.90%
  22  T_pseudojuberthiei_IZ133857_1     1.95%    passed     98.90%
  23  T_pseudojuberthiei_IZ133857_2     1.95%    passed     98.90%
  24  T_pseudojuberthiei_IZ133868_3     1.95%    passed     98.90%
  25  T_pseudojuberthiei_IZ133871_2     1.95%    passed     98.90%
  26  T_pseudojuberthiei_IZ133855_3     1.95%    passed     98.22%
  27  T_pseudojuberthiei_IZ133857_5     1.95%    passed     99.40%
  28  T_pseudojuberthiei_IZ133857_6     1.95%    passed     99.40%
  29  T_pseudojuberthiei_IZ133868_4     1.95%    passed     99.22%
  30  T_pseudojuberthiei_IZ133857_4     1.95%    passed     99.21%
  31  T_pseudojuberthiei_IZ133869       1.95%    passed     99.82%
  32  T_pseudojuberthiei_IZ133857_3     1.73%    passed     99.43%
  33  T_pseudojuberthiei_IZ151618_1     1.73%    passed     98.37%
  34  T_pseudojuberthiei_IZ151618_2     1.73%    passed     98.37%
  35  T_pseudojuberthiei_IZ133870_4     1.95%    passed     99.67%
  36  T_pseudojuberthiei_IZ133870_5    15.15%    passed     88.76%
  37  T_pseudojuberthiei_IZ133859_1     1.95%    passed     98.07%
  38  T_pseudojuberthiei_IZ133859_10    1.95%    passed     98.90%
  39  T_pseudojuberthiei_IZ133864-9     1.95%    passed     98.90%
  40  T_pseudojuberthiei_IZ133864-6     1.95%    passed     98.90%
  41  T_pseudojuberthiei_IZ133859_3     1.95%    passed     98.90%
  42  T_pseudojuberthiei_IZ133863-7     1.95%    passed     98.90%
  43  T_pseudojuberthiei_IZ133863-8    10.17%    passed     98.55%
  44  T_pseudojuberthiei_IZ133859_2     1.73%    passed     98.32%
  45  T_pseudojuberthiei_IZ133859_4     1.73%    passed     98.32%
  46  T_pseudojuberthiei_IZ133859_9     2.38%    passed     98.43%
  47  T_pseudojuberthiei_IZ133868_8    21.00%    passed     94.61%
  48  T_pseudojuberthiei_IZ133864-4     1.73%    passed     94.78%
  49  T_pseudojuberthiei_IZ133864-7     1.95%    passed     98.09%
  50  T_pseudojuberthiei_IZ133864-8     1.73%    passed     98.88%
  51  T_pseudojuberthiei_IZ133870_1    22.94%    passed     72.44%
  52  T_pseudojuberthiei_IZ133871_1     8.44%    passed     99.28%
  53  T_pseudojuberthiei_IZ133859_7    13.20%    passed     95.60%
  54  T_cf_platnicki_IZ134766           2.60%    passed     99.23%
  55  T_juberthiei_IZ134763f            2.60%    passed     98.44%
  56  T_juberthiei_IZ134763m            3.03%    passed     98.28%
  57  T_juberthiei_IZ134767_1          12.55%    passed     96.07%
  58  T_juberthiei_IZ134767_2          12.77%    passed     94.22%
  59  T_juberthiei_IZ134767_5          12.34%    passed     97.18%
  60  T_aelleni_IZ134764                1.73%    passed     88.23%
  61  T_sharmai_IZ151558_1              1.30%    passed     99.50%
  62  T_sharmai_IZ151558_2              1.30%    passed     99.50%
  63  T_dogny_IZ151570_1                2.16%    passed     90.45%
  64  T_dogny_IZ151570_2                2.16%    passed     90.45%
****  TOTAL                             4.55%  2 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: T_pin_IZ133874_2 is identical to T_pin_IZ133854_2 but kept for subsequent analysis
NOTE: T_pseudojuberthiei_IZ133855_2 is identical to T_pseudojuberthiei_IZ133855_1 but kept for subsequent analysis
NOTE: T_pseudojuberthiei_IZ133857_6 is identical to T_pseudojuberthiei_IZ133857_5 but kept for subsequent analysis
NOTE: T_pseudojuberthiei_IZ151618_2 is identical to T_pseudojuberthiei_IZ151618_1 but kept for subsequent analysis
NOTE: T_pseudojuberthiei_IZ133859_4 is identical to T_pseudojuberthiei_IZ133859_2 but kept for subsequent analysis
NOTE: T_sharmai_IZ151558_2 is identical to T_sharmai_IZ151558_1 but kept for subsequent analysis
NOTE: T_dogny_IZ151570_2 is identical to T_dogny_IZ151570_1 but kept for subsequent analysis
NOTE: 14 identical sequences (see below) will be ignored for subsequent analysis
NOTE: T_pin_IZ133875_4 (identical to T_pin_IZ133854_2) is ignored but added at the end
NOTE: T_pin_IZ133875 (identical to T_pin_IZ133854_2) is ignored but added at the end
NOTE: T_pin_IZ133876 (identical to T_pin_IZ133854_2) is ignored but added at the end
NOTE: T_pin_IZ133875_2 (identical to T_pin_IZ133854_2) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133856 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133857_1 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133857_2 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133868_3 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133871_2 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133859_10 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133864-9 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133864-6 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133859_3 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end
NOTE: T_pseudojuberthiei_IZ133863-7 (identical to T_pseudojuberthiei_IZ133855_1) is ignored but added at the end

For your convenience alignment with unique sequences printed to Troglosironidae_16S.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.002 seconds
NOTE: ModelFinder requires 2 MB RAM!
ModelFinder will test 88 DNA models (sample size: 462) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            3259.391     97  6712.783     6765.014     7113.933
  2  JC+I          3153.609     98  6503.218     6556.673     6908.504
  3  JC+G4         3141.357     98  6478.714     6532.168     6883.999
  4  JC+I+G4       3138.444     99  6474.887     6529.583     6884.308
  5  F81+F         3143.542     100 6487.083     6543.039     6900.640
  6  F81+F+I       3016.420     101 6234.839     6292.073     6652.531
  7  F81+F+G4      2991.363     101 6184.727     6241.960     6602.419
  8  F81+F+I+G4    2987.694     102 6179.387     6237.917     6601.215
  9  K2P           3259.175     98  6714.349     6767.804     7119.635
 10  K2P+I         3153.452     99  6504.904     6559.600     6914.325
 11  K2P+G4        3141.113     99  6480.226     6534.922     6889.646
 12  K2P+I+G4      3138.124     100 6476.249     6532.204     6889.805
 13  HKY+F         3137.895     101 6477.790     6535.023     6895.482
 14  HKY+F+I       3007.149     102 6218.298     6276.828     6640.126
 15  HKY+F+G4      2978.356     102 6160.712     6219.241     6582.540
 16  HKY+F+I+G4    2974.576     103 6155.152     6214.996     6581.115
 17  TNe           3258.197     99  6714.393     6769.089     7123.814
 18  TNe+I         3152.268     100 6504.535     6560.491     6918.092
 19  TNe+G4        3138.889     100 6477.778     6533.734     6891.335
 20  TNe+I+G4      3135.993     101 6473.985     6531.219     6891.677
 21  TN+F          3132.709     102 6469.418     6527.948     6891.246
 22  TN+F+I        3002.042     103 6210.085     6269.928     6636.048
 23  TN+F+G4       2969.226     103 6144.453     6204.296     6570.416
 24  TN+F+I+G4     2965.949     104 6139.898     6201.074     6569.997
 25  K3P           3212.525     99  6623.050     6677.746     7032.471
 26  K3P+I         3100.205     100 6400.411     6456.366     6813.967
 27  K3P+G4        3087.226     100 6374.453     6430.409     6788.009
 28  K3P+I+G4      3083.924     101 6369.847     6427.081     6787.539
 29  K3Pu+F        3124.717     102 6453.434     6511.963     6875.261
 30  K3Pu+F+I      2996.376     103 6198.753     6258.596     6624.716
 31  K3Pu+F+G4     2970.279     103 6146.558     6206.402     6572.521
 32  K3Pu+F+I+G4   2966.781     104 6141.562     6202.739     6571.661
 33  TPM2+F        3118.391     102 6440.781     6499.311     6862.609
 34  TPM2+F+I      2993.690     103 6193.380     6253.224     6619.343
 35  TPM2+F+G4     2968.453     103 6142.906     6202.750     6568.869
 36  TPM2+F+I+G4   2965.175     104 6138.350     6199.527     6568.449
 37  TPM2u+F       3118.390     102 6440.780     6499.310     6862.608
 38  TPM2u+F+I     2993.690     103 6193.380     6253.224     6619.343
 39  TPM2u+F+G4    2968.445     103 6142.889     6202.733     6568.852
 40  TPM2u+F+I+G4  2965.170     104 6138.341     6199.517     6568.440
 41  TPM3+F        3127.341     102 6458.682     6517.211     6880.510
 42  TPM3+F+I      2998.686     103 6203.373     6263.216     6629.336
 43  TPM3+F+G4     2971.176     103 6148.352     6208.195     6574.315
 44  TPM3+F+I+G4   2967.496     104 6142.993     6204.169     6573.091
 45  TPM3u+F       3127.341     102 6458.682     6517.212     6880.510
 46  TPM3u+F+I     2998.686     103 6203.373     6263.216     6629.336
 47  TPM3u+F+G4    2971.183     103 6148.366     6208.209     6574.329
 48  TPM3u+F+I+G4  2967.497     104 6142.993     6204.170     6573.092
 49  TIMe          3211.543     100 6623.085     6679.041     7036.642
 50  TIMe+I        3099.034     101 6400.069     6457.302     6817.761
 51  TIMe+G4       3084.866     101 6371.731     6428.965     6789.423
 52  TIMe+I+G4     3081.776     102 6367.551     6426.080     6789.379
 53  TIM+F         3119.490     103 6444.979     6504.823     6870.942
 54  TIM+F+I       2991.253     104 6190.506     6251.683     6620.605
 55  TIM+F+G4      2961.338     104 6130.677     6191.853     6560.776
 56  TIM+F+I+G4    2958.258     105 6126.516     6189.044     6560.750
 57  TIM2e         3203.601     100 6607.201     6663.157     7020.758
 58  TIM2e+I       3104.787     101 6411.574     6468.807     6829.266
 59  TIM2e+G4      3092.582     101 6387.164     6444.398     6804.856
 60  TIM2e+I+G4    3089.528     102 6383.057     6441.586     6804.884
 61  TIM2+F        3114.331     103 6434.662     6494.506     6860.625
 62  TIM2+F+I      2989.490     104 6186.980     6248.157     6617.079
 63  TIM2+F+G4     2958.733     104 6125.465     6186.642     6555.564
 64  TIM2+F+I+G4   2956.111     105 6122.223     6184.751     6556.457
 65  TIM3e         3208.982     100 6617.964     6673.920     7031.520
 66  TIM3e+I       3104.178     101 6410.356     6467.590     6828.048
 67  TIM3e+G4      3083.842     101 6369.684     6426.917     6787.376
 68  TIM3e+I+G4    3081.461     102 6366.922     6425.451     6788.749
 69  TIM3+F        3121.408     103 6448.816     6508.660     6874.780
 70  TIM3+F+I      2993.089     104 6194.178     6255.354     6624.277
 71  TIM3+F+G4     2963.214     104 6134.428     6195.604     6564.526
 72  TIM3+F+I+G4   2959.817     105 6129.634     6192.162     6563.868
 73  TVMe          3147.909     101 6497.818     6555.051     6915.510
 74  TVMe+I        3047.552     102 6299.104     6357.633     6720.931
 75  TVMe+G4       3033.375     102 6270.749     6329.279     6692.577
 76  TVMe+I+G4     3030.484     103 6266.969     6326.812     6692.932
 77  TVM+F         3107.127     104 6422.255     6483.431     6852.354
 78  TVM+F+I       2985.134     105 6180.267     6242.796     6614.502
 79  TVM+F+G4      2961.398     105 6132.795     6195.323     6567.030
 80  TVM+F+I+G4    2958.229     106 6128.459     6192.357     6566.828
 81  SYM           3147.157     102 6498.314     6556.844     6920.142
 82  SYM+I         3046.644     103 6299.288     6359.131     6725.251
 83  SYM+G4        3031.551     103 6269.101     6328.945     6695.065
 84  SYM+I+G4      3028.871     104 6265.742     6326.918     6695.840
 85  GTR+F         3102.374     105 6414.748     6477.276     6848.983
 86  GTR+F+I       2980.417     106 6172.835     6236.733     6611.205
 87  GTR+F+G4      2952.893     106 6117.785     6181.684     6556.155
 88  GTR+F+I+G4    2950.097     107 6114.194     6179.482     6556.699
Akaike Information Criterion:           GTR+F+I+G4
Corrected Akaike Information Criterion: GTR+F+I+G4
Bayesian Information Criterion:         TIM2+F+G4
Best-fit model: TIM2+F+G4 chosen according to BIC

All model information printed to Troglosironidae_16S.fasta.model.gz
CPU time for ModelFinder: 3.836 seconds (0h:0m:3s)
Wall-clock time for ModelFinder: 4.101 seconds (0h:0m:4s)
Generating 1000 samples for ultrafast bootstrap (seed: 172584)...

NOTE: 2 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -3057.736
2. Current log-likelihood: -2989.483
3. Current log-likelihood: -2960.297
4. Current log-likelihood: -2959.103
5. Current log-likelihood: -2958.858
Optimal log-likelihood: -2958.734
Rate parameters:  A-C: 2.99032  A-G: 2.93505  A-T: 2.99032  C-G: 1.00000  C-T: 7.77121  G-T: 1.00000
Base frequencies:  A: 0.409  C: 0.116  G: 0.138  T: 0.337
Gamma shape alpha: 0.338
Parameters optimization took 5 rounds (0.157 sec)
Computing ML distances based on estimated model parameters... 0.016 sec
Computing BIONJ tree...
0.032 seconds
Log-likelihood of BIONJ tree: -2965.214
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 0.210 second
Computing log-likelihood of 98 initial trees ... 0.718 seconds
Current best score: -2953.850

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -2947.454
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 2: -2946.349
BETTER TREE FOUND at iteration 10: -2946.348
Iteration 10 / LogL: -2946.348 / Time: 0h:0m:2s
Iteration 20 / LogL: -2949.791 / Time: 0h:0m:4s
Finish initializing candidate tree set (20)
Current best tree score: -2946.348 / CPU time: 4.175
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 30 / LogL: -2946.350 / Time: 0h:0m:6s (0h:0m:16s left)
Iteration 40 / LogL: -2946.348 / Time: 0h:0m:7s (0h:0m:13s left)
Iteration 50 / LogL: -2946.349 / Time: 0h:0m:8s (0h:0m:10s left)
Log-likelihood cutoff on original alignment: -2973.090
Iteration 60 / LogL: -2946.349 / Time: 0h:0m:10s (0h:0m:8s left)
BETTER TREE FOUND at iteration 62: -2946.348
Iteration 70 / LogL: -2947.448 / Time: 0h:0m:11s (0h:0m:15s left)
Iteration 80 / LogL: -2946.349 / Time: 0h:0m:13s (0h:0m:14s left)
Iteration 90 / LogL: -2946.488 / Time: 0h:0m:15s (0h:0m:12s left)
BETTER TREE FOUND at iteration 96: -2946.347
Iteration 100 / LogL: -2946.348 / Time: 0h:0m:16s (0h:0m:15s left)
Log-likelihood cutoff on original alignment: -2973.090
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.982
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 110 / LogL: -2947.447 / Time: 0h:0m:17s (0h:0m:14s left)
Iteration 120 / LogL: -2947.447 / Time: 0h:0m:19s (0h:0m:12s left)
BETTER TREE FOUND at iteration 121: -2946.347
Iteration 130 / LogL: -2946.349 / Time: 0h:0m:20s (0h:0m:14s left)
Iteration 140 / LogL: -2954.072 / Time: 0h:0m:21s (0h:0m:12s left)
Iteration 150 / LogL: -2946.368 / Time: 0h:0m:23s (0h:0m:11s left)
Log-likelihood cutoff on original alignment: -2973.090
Iteration 160 / LogL: -2955.811 / Time: 0h:0m:24s (0h:0m:9s left)
Iteration 170 / LogL: -2947.448 / Time: 0h:0m:26s (0h:0m:7s left)
Iteration 180 / LogL: -2949.094 / Time: 0h:0m:27s (0h:0m:6s left)
Iteration 190 / LogL: -2946.486 / Time: 0h:0m:29s (0h:0m:4s left)
Iteration 200 / LogL: -2946.876 / Time: 0h:0m:30s (0h:0m:3s left)
Log-likelihood cutoff on original alignment: -2973.090
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.983
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 210 / LogL: -2971.365 / Time: 0h:0m:32s (0h:0m:13s left)
Iteration 220 / LogL: -2946.349 / Time: 0h:0m:33s (0h:0m:12s left)
Iteration 230 / LogL: -2946.348 / Time: 0h:0m:34s (0h:0m:10s left)
Iteration 240 / LogL: -2946.356 / Time: 0h:0m:36s (0h:0m:9s left)
Iteration 250 / LogL: -2946.349 / Time: 0h:0m:37s (0h:0m:7s left)
Log-likelihood cutoff on original alignment: -2973.090
Iteration 260 / LogL: -2946.350 / Time: 0h:0m:39s (0h:0m:6s left)
Iteration 270 / LogL: -2946.348 / Time: 0h:0m:41s (0h:0m:4s left)
Iteration 280 / LogL: -2948.480 / Time: 0h:0m:42s (0h:0m:3s left)
Iteration 290 / LogL: -2954.366 / Time: 0h:0m:43s (0h:0m:1s left)
Iteration 300 / LogL: -2946.349 / Time: 0h:0m:45s (0h:0m:0s left)
Log-likelihood cutoff on original alignment: -2973.090
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.971
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 310 / LogL: -2946.349 / Time: 0h:0m:46s (0h:0m:13s left)
Iteration 320 / LogL: -2946.349 / Time: 0h:0m:48s (0h:0m:12s left)
Iteration 330 / LogL: -2946.348 / Time: 0h:0m:50s (0h:0m:10s left)
Iteration 340 / LogL: -2946.875 / Time: 0h:0m:51s (0h:0m:9s left)
Iteration 350 / LogL: -2954.073 / Time: 0h:0m:53s (0h:0m:7s left)
Log-likelihood cutoff on original alignment: -2973.269
BETTER TREE FOUND at iteration 354: -2946.347
Iteration 360 / LogL: -2947.448 / Time: 0h:0m:54s (0h:0m:14s left)
Iteration 370 / LogL: -2961.094 / Time: 0h:0m:56s (0h:0m:12s left)
Iteration 380 / LogL: -2946.347 / Time: 0h:0m:57s (0h:0m:11s left)
Iteration 390 / LogL: -2966.443 / Time: 0h:0m:59s (0h:0m:9s left)
Iteration 400 / LogL: -2946.349 / Time: 0h:1m:0s (0h:0m:8s left)
Log-likelihood cutoff on original alignment: -2973.269
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.979
NOTE: UFBoot does not converge, continue at least 100 more iterations
Iteration 410 / LogL: -2952.899 / Time: 0h:1m:2s (0h:0m:13s left)
Iteration 420 / LogL: -2946.348 / Time: 0h:1m:4s (0h:0m:12s left)
Iteration 430 / LogL: -2971.891 / Time: 0h:1m:6s (0h:0m:10s left)
Iteration 440 / LogL: -2946.348 / Time: 0h:1m:7s (0h:0m:9s left)
Iteration 450 / LogL: -2947.785 / Time: 0h:1m:9s (0h:0m:7s left)
Log-likelihood cutoff on original alignment: -2973.269
Iteration 460 / LogL: -2952.677 / Time: 0h:1m:11s (0h:0m:6s left)
Iteration 470 / LogL: -2946.348 / Time: 0h:1m:12s (0h:0m:4s left)
Iteration 480 / LogL: -2946.347 / Time: 0h:1m:14s (0h:0m:3s left)
Iteration 490 / LogL: -2946.348 / Time: 0h:1m:16s (0h:0m:1s left)
Iteration 500 / LogL: -2946.876 / Time: 0h:1m:17s (0h:0m:0s left)
Log-likelihood cutoff on original alignment: -2973.269
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.993
TREE SEARCH COMPLETED AFTER 500 ITERATIONS / Time: 0h:1m:17s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -2946.347
Optimal log-likelihood: -2946.344
Rate parameters:  A-C: 2.97974  A-G: 2.96357  A-T: 2.97974  C-G: 1.00000  C-T: 7.74619  G-T: 1.00000
Base frequencies:  A: 0.409  C: 0.116  G: 0.138  T: 0.337
Gamma shape alpha: 0.327
Parameters optimization took 1 rounds (0.012 sec)
BEST SCORE FOUND : -2946.344

Testing tree branches by SH-like aLRT with 1000 replicates...
0.574 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Troglosironidae_16S.fasta.splits.nex
Total tree length: 3.773

Total number of iterations: 500
CPU time used for tree search: 76.928 sec (0h:1m:16s)
Wall-clock time used for tree search: 77.370 sec (0h:1m:17s)
Total CPU time used: 77.880 sec (0h:1m:17s)
Total wall-clock time used: 78.545 sec (0h:1m:18s)

Computing bootstrap consensus tree...
Reading input file Troglosironidae_16S.fasta.splits.nex...
50 taxa and 1300 splits.
Consensus tree written to Troglosironidae_16S.fasta.contree
Reading input trees file Troglosironidae_16S.fasta.contree
Log-likelihood of consensus tree: -2946.348

Analysis results written to: 
  IQ-TREE report:                Troglosironidae_16S.fasta.iqtree
  Maximum-likelihood tree:       Troglosironidae_16S.fasta.treefile
  Likelihood distances:          Troglosironidae_16S.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Troglosironidae_16S.fasta.splits.nex
  Consensus tree:                Troglosironidae_16S.fasta.contree
  Screen log file:               Troglosironidae_16S.fasta.log

Date and Time: Tue Nov 19 03:24:47 2019
